Final Multiqc Report
https://github.com/Daylily-Informatics/daylily (BRANCH:* sentb) (TAG:grape-ape.v1) (HASH:67dbf7bd)
- Project/Budget
- da-us-west-2d-giab-sownsamp-test
- Budget @ Runtime
- $43.608 of $200.0 spent ( 21.804%)
- Spot Instances
- c6i.32xlarge c7i.48xlarge c7i.metal-48xl m7i.48xlarge m7i.metal-48xl r7i.48xlarge r7i.metal-48xl
- Spot Costs per hr
- median: $2.99 mean: $2.97 ( avg cost per vcpu,per min: $0.000258112 )
- FQ->BAM.sort avg Costs
- BAM mrkdup avg Cost
- 0 min, costing $0.00
- Results Dir (GB)
- 154G
Report
generated on 2025-05-13, 05:31 UTC
based on data in:
/fsx/analysis_results/ubuntu/ont_ds/daylily/results/day/hg38
Controls Concordance Report
Concordance Stats For The GIAB HC Regions For This Sample.
| mqc_id | SNPClass | Sample | TgtRegionSize | TN | FN | TP | FP | Fscore | Sensitivity-Recall | Specificity | FDR | PPV | Precision | AltId | CmpFootprint | AllVarMeanDP | CovBin | Aligner | SNVCaller |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-All | All | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,515,247,063.0 | 514,177.0 | 3,181,503.0 | 149,628.0 | 0.9 | 0.9 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50 | DEL_50 | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,518,736,212.0 | 85,278.0 | 121,253.0 | 25,980.0 | 0.7 | 0.6 | 1.0 | 0.2 | 0.8 | 0.8 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50 | DEL_gt50 | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,518,942,742.0 | 1.0 | 0.0 | 12.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont | |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-INS_50 | INS_50 | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,518,738,602.0 | 84,679.0 | 119,462.0 | 22,656.0 | 0.7 | 0.6 | 1.0 | 0.2 | 0.8 | 0.8 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50 | INS_gt50 | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,518,942,733.0 | 3.0 | 7.0 | 29.0 | 0.3 | 0.7 | 1.0 | 0.8 | 0.2 | 0.2 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50 | Indel_50 | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,518,923,916.0 | 9,492.0 | 9,335.0 | 826.0 | 0.6 | 0.5 | 1.0 | 0.1 | 0.9 | 0.9 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50 | Indel_gt50 | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,518,942,496.0 | 62.0 | 185.0 | 4.0 | 0.8 | 0.7 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-SNPts | SNPts | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,516,726,506.0 | 222,252.0 | 1,993,985.0 | 68,832.0 | 0.9 | 0.9 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv | SNPtv | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,517,893,057.0 | 112,410.0 | 937,276.0 | 31,289.0 | 0.9 | 0.9 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-All | All | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,419,692.0 | 24,676.0 | 418,248.0 | 104,667.0 | 0.9 | 0.9 | 1.0 | 0.2 | 0.8 | 0.8 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50 | DEL_50 | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,837,036.0 | 6,194.0 | 19,386.0 | 16,824.0 | 0.6 | 0.8 | 1.0 | 0.5 | 0.5 | 0.5 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50 | DEL_gt50 | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,862,610.0 | 5.0 | 1.0 | 65.0 | 0.0 | 0.2 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-INS_50 | INS_50 | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,837,055.0 | 6,441.0 | 19,120.0 | 13,025.0 | 0.7 | 0.7 | 1.0 | 0.4 | 0.6 | 0.6 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50 | INS_gt50 | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,862,606.0 | 6.0 | 4.0 | 283.0 | 0.0 | 0.4 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50 | Indel_50 | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,860,146.0 | 781.0 | 1,689.0 | 2,198.0 | 0.5 | 0.7 | 1.0 | 0.6 | 0.4 | 0.4 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50 | Indel_gt50 | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,862,533.0 | 14.0 | 69.0 | 196.0 | 0.4 | 0.8 | 1.0 | 0.7 | 0.3 | 0.3 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-SNPts | SNPts | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,594,796.0 | 7,475.0 | 260,345.0 | 45,243.0 | 0.9 | 1.0 | 1.0 | 0.1 | 0.9 | 0.9 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv | SNPtv | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,741,222.0 | 3,760.0 | 117,634.0 | 26,833.0 | 0.9 | 1.0 | 1.0 | 0.2 | 0.8 | 0.8 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-All | All | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,084,448,522.0 | 125,165.0 | 3,712,714.0 | 1,315,480.0 | 0.8 | 1.0 | 1.0 | 0.3 | 0.7 | 0.7 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50 | DEL_50 | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,066,552.0 | 42,089.0 | 177,760.0 | 172,301.0 | 0.6 | 0.8 | 1.0 | 0.5 | 0.5 | 0.5 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50 | DEL_gt50 | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,286,362.0 | 37.0 | 2.0 | 583.0 | 0.0 | 0.1 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-INS_50 | INS_50 | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,066,564.0 | 45,613.0 | 174,224.0 | 135,131.0 | 0.7 | 0.8 | 1.0 | 0.4 | 0.6 | 0.6 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50 | INS_gt50 | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,286,359.0 | 26.0 | 16.0 | 2,497.0 | 0.0 | 0.4 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50 | Indel_50 | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,256,363.0 | 6,482.0 | 23,556.0 | 32,680.0 | 0.5 | 0.8 | 1.0 | 0.6 | 0.4 | 0.4 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50 | Indel_gt50 | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,285,364.0 | 95.0 | 942.0 | 2,199.0 | 0.5 | 0.9 | 1.0 | 0.7 | 0.3 | 0.3 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-SNPts | SNPts | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,086,002,285.0 | 19,938.0 | 2,264,178.0 | 514,709.0 | 0.9 | 1.0 | 1.0 | 0.2 | 0.8 | 0.8 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv | SNPtv | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,087,203,480.0 | 10,885.0 | 1,072,036.0 | 455,380.0 | 0.8 | 1.0 | 1.0 | 0.3 | 0.7 | 0.7 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods20x_HG006_sup-PAY77227_0-ont-sentdont-All | All | Ods20x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,084,448,498.0 | 96,988.0 | 3,740,915.0 | 1,364,795.0 | 0.8 | 1.0 | 1.0 | 0.3 | 0.7 | 0.7 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods20x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50 | DEL_50 | Ods20x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,068,722.0 | 36,186.0 | 181,493.0 | 175,231.0 | 0.6 | 0.8 | 1.0 | 0.5 | 0.5 | 0.5 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods20x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50 | DEL_gt50 | Ods20x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,286,362.0 | 37.0 | 2.0 | 698.0 | 0.0 | 0.1 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods20x_HG006_sup-PAY77227_0-ont-sentdont-INS_50 | INS_50 | Ods20x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,068,080.0 | 40,388.0 | 177,933.0 | 137,494.0 | 0.7 | 0.8 | 1.0 | 0.4 | 0.6 | 0.6 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods20x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50 | INS_gt50 | Ods20x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,286,359.0 | 27.0 | 15.0 | 2,499.0 | 0.0 | 0.4 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods20x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50 | Indel_50 | Ods20x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,252,730.0 | 5,913.0 | 27,758.0 | 40,937.0 | 0.5 | 0.8 | 1.0 | 0.6 | 0.4 | 0.4 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods20x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50 | Indel_gt50 | Ods20x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,285,268.0 | 85.0 | 1,048.0 | 2,513.0 | 0.4 | 0.9 | 1.0 | 0.7 | 0.3 | 0.3 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods20x_HG006_sup-PAY77227_0-ont-sentdont-SNPts | SNPts | Ods20x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,086,002,292.0 | 8,994.0 | 2,275,115.0 | 527,357.0 | 0.9 | 1.0 | 1.0 | 0.2 | 0.8 | 0.8 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods20x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv | SNPtv | Ods20x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,087,203,492.0 | 5,358.0 | 1,077,551.0 | 478,066.0 | 0.8 | 1.0 | 1.0 | 0.3 | 0.7 | 0.7 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods30x_HG006_sup-PAY77227_0-ont-sentdont-All | All | Ods30x_HG006_sup-PAY77227_0 | 331,588,110.0 | 331,188,998.0 | 1,405.0 | 397,707.0 | 717.0 | 1.0 | 1.0 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC_x_ultima_x_clinvar | -1.0 | -2.0 | ont | sentdont |
| Ods30x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50 | DEL_50 | Ods30x_HG006_sup-PAY77227_0 | 331,588,110.0 | 331,570,693.0 | 446.0 | 16,971.0 | 145.0 | 1.0 | 1.0 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC_x_ultima_x_clinvar | -1.0 | -2.0 | ont | sentdont |
| Ods30x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50 | DEL_gt50 | Ods30x_HG006_sup-PAY77227_0 | 331,588,110.0 | 331,588,110.0 | 0.0 | 0.0 | 0.0 | 1.0 | HG006 | giabHC_x_ultima_x_clinvar | -1.0 | -2.0 | ont | sentdont | |||||
| Ods30x_HG006_sup-PAY77227_0-ont-sentdont-INS_50 | INS_50 | Ods30x_HG006_sup-PAY77227_0 | 331,588,110.0 | 331,571,741.0 | 432.0 | 15,937.0 | 93.0 | 1.0 | 1.0 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC_x_ultima_x_clinvar | -1.0 | -2.0 | ont | sentdont |
| Ods30x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50 | INS_gt50 | Ods30x_HG006_sup-PAY77227_0 | 331,588,110.0 | 331,588,109.0 | 0.0 | 1.0 | 0.0 | 1.0 | 1.0 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC_x_ultima_x_clinvar | -1.0 | -2.0 | ont | sentdont |
| Ods30x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50 | Indel_50 | Ods30x_HG006_sup-PAY77227_0 | 331,588,110.0 | 331,586,680.0 | 40.0 | 1,390.0 | 30.0 | 1.0 | 1.0 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC_x_ultima_x_clinvar | -1.0 | -2.0 | ont | sentdont |
| Ods30x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50 | Indel_gt50 | Ods30x_HG006_sup-PAY77227_0 | 331,588,110.0 | 331,588,087.0 | 1.0 | 22.0 | 0.0 | 1.0 | 1.0 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC_x_ultima_x_clinvar | -1.0 | -2.0 | ont | sentdont |
| Ods30x_HG006_sup-PAY77227_0-ont-sentdont-SNPts | SNPts | Ods30x_HG006_sup-PAY77227_0 | 331,588,110.0 | 331,336,502.0 | 324.0 | 251,284.0 | 290.0 | 1.0 | 1.0 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC_x_ultima_x_clinvar | -1.0 | -2.0 | ont | sentdont |
| Ods30x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv | SNPtv | Ods30x_HG006_sup-PAY77227_0 | 331,588,110.0 | 331,475,846.0 | 162.0 | 112,102.0 | 159.0 | 1.0 | 1.0 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC_x_ultima_x_clinvar | -1.0 | -2.0 | ont | sentdont |
Rules Benchmark Data2
| combined_rule | sample | rule | s | h:m:s | max_rss | max_vms | max_uss | max_pss | io_in | io_out | mean_load | cpu_time | hostname | ip | nproc | cpu_efficiency | instance_type | region_az | spot_cost | snakemake_threads | task_cost | rule_prefix | rule_suffix |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| alignstats_smmary_compile-all. | all. | alignstats_smmary_compile | 0.7 | 0:00:00 | 13.9 | 30.5 | 6.9 | 7.4 | 3.7 | 0.0 | 0.0 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 2.0 | 0.0 | alignstats_smmary_compile | NA |
| alignstats_summary-all. | all. | alignstats_summary | 0.3 | 0:00:00 | 15.3 | 38.6 | 6.3 | 7.0 | 0.0 | 0.0 | 0.0 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 1.0 | 0.0 | alignstats_summary | NA |
| final_multiqc2-DAY_all. | DAY_all. | final_multiqc2 | 11.0 | 0:00:10 | 138.1 | 2,698.1 | 132.8 | 134.5 | 1,973.6 | 12.9 | 59.2 | 6.7 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.6 | r7i.2xlarge | us-west-2d | 0.2 | 4.0 | 0.0 | final_multiqc2 | NA |
| ont.alignstats-Ods20x_HG006_sup-PAY77227_0. | Ods20x_HG006_sup-PAY77227_0. | ont.alignstats | 286.7 | 0:04:46 | 9,325.7 | 11,434.2 | 9,063.0 | 9,063.6 | 627.0 | 0.0 | 271.9 | 780.5 | i192-dy-all-1 | 10.0.1.128 | 192.0 | 2.7 | c7i.48xlarge | us-west-2d | 3.0 | 32.0 | 0.0 | ont | alignstats |
| ont.alignstats-Ods30x_HG006_sup-PAY77227_0. | Ods30x_HG006_sup-PAY77227_0. | ont.alignstats | 390.6 | 0:06:30 | 10,455.6 | 12,499.2 | 10,475.5 | 10,476.2 | 1,362.1 | 0.0 | 297.0 | 1,161.3 | i192-dy-all-1 | 10.0.1.128 | 192.0 | 3.0 | c7i.48xlarge | us-west-2d | 3.0 | 32.0 | 0.1 | ont | alignstats |
| ont.sentdont.1-24-Ods5x_HG006_sup-PAY77227_0. | Ods5x_HG006_sup-PAY77227_0. | ont.sentdont.1-24 | 3,990.5 | 1:06:30 | 38,996.0 | 50,226.1 | 38,969.0 | 38,972.8 | 19,382.1 | 13,408.2 | 18,343.8 | 672,821.9 | i192-dy-all-3 | 10.0.1.102 | 192.0 | 168.6 | c7i.48xlarge | us-west-2d | 3.0 | 192.0 | 3.3 | ont | sentdont.1-24 |
| ont.sentdont.1-24-Ods10x_HG006_sup-PAY77227_0. | Ods10x_HG006_sup-PAY77227_0. | ont.sentdont.1-24 | 2,391.1 | 0:39:51 | 39,000.3 | 50,223.1 | 39,087.4 | 39,092.8 | 26,761.6 | 7,476.2 | 17,611.7 | 364,350.0 | i192-dy-all-1 | 10.0.1.76 | 192.0 | 152.4 | c7i.48xlarge | us-west-2d | 3.0 | 192.0 | 2.0 | ont | sentdont.1-24 |
| ont.sentdont.1-24-Ods15x_HG006_sup-PAY77227_0. | Ods15x_HG006_sup-PAY77227_0. | ont.sentdont.1-24 | 1,710.6 | 0:28:30 | 38,990.1 | 50,223.1 | 38,997.2 | 39,002.4 | 32,709.4 | 4,349.7 | 16,070.1 | 230,807.8 | i192-dy-all-4 | 10.0.1.145 | 192.0 | 134.9 | c7i.48xlarge | us-west-2d | 3.0 | 192.0 | 1.4 | ont | sentdont.1-24 |
| ont.sentdont.1-24-Ods20x_HG006_sup-PAY77227_0. | Ods20x_HG006_sup-PAY77227_0. | ont.sentdont.1-24 | 1,643.3 | 0:27:23 | 38,994.6 | 50,223.1 | 38,983.9 | 38,989.2 | 40,861.8 | 4,730.7 | 13,830.0 | 192,781.2 | i192-dy-all-14 | 10.0.1.33 | 192.0 | 117.3 | m7i.metal-48xl | us-west-2d | 3.0 | 192.0 | 1.4 | ont | sentdont.1-24 |
| ont.sentdont.1-24-Ods30x_HG006_sup-PAY77227_0. | Ods30x_HG006_sup-PAY77227_0. | ont.sentdont.1-24 | 1,528.2 | 0:25:28 | 39,002.4 | 50,220.6 | 39,072.5 | 39,077.8 | 54,878.9 | 5,040.3 | 14,220.3 | 183,947.4 | i192-dy-all-3 | 10.0.1.51 | 192.0 | 120.4 | c7i.metal-48xl | us-west-2d | 2.6 | 192.0 | 1.1 | ont | sentdont.1-24 |
| ont.sentdont.concat.fofn-Ods5x_HG006_sup-PAY77227_0. | Ods5x_HG006_sup-PAY77227_0. | ont.sentdont.concat.fofn | 0.4 | 0:00:00 | 3.2 | 7.7 | 0.1 | 0.3 | 0.0 | 0.0 | 0.0 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 1.0 | 0.0 | ont | sentdont.concat.fofn |
| ont.sentdont.concat.fofn-Ods10x_HG006_sup-PAY77227_0. | Ods10x_HG006_sup-PAY77227_0. | ont.sentdont.concat.fofn | 0.4 | 0:00:00 | 15.3 | 38.7 | 6.4 | 6.8 | 0.0 | 0.0 | 0.0 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 1.0 | 0.0 | ont | sentdont.concat.fofn |
| ont.sentdont.concat.fofn-Ods15x_HG006_sup-PAY77227_0. | Ods15x_HG006_sup-PAY77227_0. | ont.sentdont.concat.fofn | 0.4 | 0:00:00 | 3.2 | 7.7 | 0.1 | 0.3 | 0.0 | 0.0 | 0.0 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 1.0 | 0.0 | ont | sentdont.concat.fofn |
| ont.sentdont.concat.fofn-Ods20x_HG006_sup-PAY77227_0. | Ods20x_HG006_sup-PAY77227_0. | ont.sentdont.concat.fofn | 21.0 | 0:00:21 | 7.0 | 23.1 | 1.0 | 1.4 | 1.8 | 0.0 | 0.0 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 1.0 | 0.0 | ont | sentdont.concat.fofn |
| ont.sentdont.concat.fofn-Ods30x_HG006_sup-PAY77227_0. | Ods30x_HG006_sup-PAY77227_0. | ont.sentdont.concat.fofn | 12.4 | 0:00:12 | 8.9 | 26.5 | 2.2 | 2.7 | 2.6 | 0.0 | 0.1 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 1.0 | 0.0 | ont | sentdont.concat.fofn |
| ont.sentdont.concordance-Ods5x_HG006_sup-PAY77227_0. | Ods5x_HG006_sup-PAY77227_0. | ont.sentdont.concordance | 2,729.4 | 0:45:29 | 60,118.7 | 364,649.9 | 60,156.0 | 60,157.3 | 1,360.3 | 12,594.3 | 116.7 | 567.7 | i192-dy-all-1 | 10.0.1.73 | 192.0 | 0.2 | c7i.metal-48xl | us-west-2d | 2.6 | 96.0 | 1.0 | ont | sentdont.concordance |
| ont.sentdont.concordance-Ods10x_HG006_sup-PAY77227_0. | Ods10x_HG006_sup-PAY77227_0. | ont.sentdont.concordance | 2,698.8 | 0:44:58 | 90,369.3 | 359,201.0 | 90,422.0 | 90,423.1 | 3,226.6 | 11,518.6 | 128.6 | 549.0 | i192-dy-all-4 | 10.0.1.145 | 192.0 | 0.2 | c7i.48xlarge | us-west-2d | 3.0 | 96.0 | 1.1 | ont | sentdont.concordance |
| ont.sentdont.concordance-Ods15x_HG006_sup-PAY77227_0. | Ods15x_HG006_sup-PAY77227_0. | ont.sentdont.concordance | 2,512.4 | 0:41:52 | 102,426.2 | 359,201.0 | 102,467.8 | 102,468.9 | 3,079.7 | 10,998.7 | 126.7 | 616.7 | i192-dy-all-4 | 10.0.1.145 | 192.0 | 0.2 | c7i.48xlarge | us-west-2d | 3.0 | 96.0 | 1.0 | ont | sentdont.concordance |
| ont.sentdont.concordance-Ods20x_HG006_sup-PAY77227_0. | Ods20x_HG006_sup-PAY77227_0. | ont.sentdont.concordance | 2,411.3 | 0:40:11 | 85,783.4 | 364,649.9 | 85,842.6 | 85,843.8 | 4,522.1 | 10,932.3 | 80.2 | 447.8 | i192-dy-all-4 | 10.0.1.66 | 192.0 | 0.2 | c7i.metal-48xl | us-west-2d | 2.6 | 96.0 | 0.9 | ont | sentdont.concordance |
| ont.sentdont.concordance-Ods30x_HG006_sup-PAY77227_0. | Ods30x_HG006_sup-PAY77227_0. | ont.sentdont.concordance | 2,696.6 | 0:44:56 | 97,772.5 | 719,838.3 | 97,788.1 | 97,789.2 | 5,792.8 | 11,074.8 | 94.3 | 6.7 | i192-dy-all-5 | 10.0.1.193 | 192.0 | 0.0 | m7i.metal-48xl | us-west-2d | 3.0 | 96.0 | 1.1 | ont | sentdont.concordance |
| ont.sentdont.merge-Ods5x_HG006_sup-PAY77227_0. | Ods5x_HG006_sup-PAY77227_0. | ont.sentdont.merge | 67.1 | 0:01:07 | 79.1 | 13,418.8 | 82.4 | 82.8 | 0.0 | 494.7 | 142.8 | 103.2 | i192-dy-all-1 | 10.0.1.73 | 192.0 | 1.5 | c7i.metal-48xl | us-west-2d | 2.6 | 64.0 | 0.0 | ont | sentdont.merge |
| ont.sentdont.merge-Ods10x_HG006_sup-PAY77227_0. | Ods10x_HG006_sup-PAY77227_0. | ont.sentdont.merge | 41.9 | 0:00:41 | 78.9 | 12,139.0 | 82.2 | 82.7 | 6.0 | 201.5 | 84.5 | 39.3 | i192-dy-all-9 | 10.0.1.108 | 192.0 | 0.9 | c7i.metal-48xl | us-west-2d | 2.6 | 64.0 | 0.0 | ont | sentdont.merge |
| ont.sentdont.merge-Ods15x_HG006_sup-PAY77227_0. | Ods15x_HG006_sup-PAY77227_0. | ont.sentdont.merge | 30.7 | 0:00:30 | 78.8 | 12,523.0 | 83.2 | 83.4 | 6.0 | 238.4 | 144.6 | 46.2 | i192-dy-all-4 | 10.0.1.145 | 192.0 | 1.5 | c7i.48xlarge | us-west-2d | 3.0 | 64.0 | 0.0 | ont | sentdont.merge |
| ont.sentdont.merge-Ods20x_HG006_sup-PAY77227_0. | Ods20x_HG006_sup-PAY77227_0. | ont.sentdont.merge | 290.6 | 0:04:50 | 91.2 | 13,438.7 | 108.9 | 109.2 | 477.9 | 727.3 | 21.5 | 0.0 | i192-dy-all-8 | 10.0.1.137 | 192.0 | 0.0 | m7i.metal-48xl | us-west-2d | 3.0 | 64.0 | 0.1 | ont | sentdont.merge |
| ont.sentdont.merge-Ods30x_HG006_sup-PAY77227_0. | Ods30x_HG006_sup-PAY77227_0. | ont.sentdont.merge | 81.7 | 0:01:21 | 88.1 | 13,501.9 | 110.0 | 110.5 | 107.7 | 724.5 | 49.4 | 7.4 | i192-dy-all-3 | 10.0.1.51 | 192.0 | 0.1 | c7i.metal-48xl | us-west-2d | 2.6 | 64.0 | 0.0 | ont | sentdont.merge |
Alignstats Data
Alignstats Data.
| sample | aligner | AlignedBases | AlignedBasesPct | AlignedReadLengthMean | AlignedReadLengthMedian | AlignedReadLengthMode | AlignedReadLengthStandardDeviation | ChimericReadPairPct | DeletedBases | DeletedBasesPct | DuplicateBases | DuplicateBasesPct | DuplicateReads | DuplicateReadsPct | FilteredRecords | FilteredRecordsPct | InputFileName | InputFileSize | InsertSizeMean | InsertSizeMedian | InsertSizeMode | InsertSizeStandardDeviation | InsertedBases | InsertedBasesPct | MappedBases | MappedBasesPct | MappedReads | MappedReadsPct | MatchedBases | MatchedBasesPct | MismatchedBases | MismatchedBasesPct | PerfectBases | PerfectBasesPct | PerfectReads | PerfectReadsPct | Q20Bases | Q20BasesPct | R1AlignedBases | R1AlignedBasesPct | R1AlignedReadLengthMean | R1AlignedReadLengthMedian | R1AlignedReadLengthMode | R1AlignedReadLengthStandardDeviation | R1DeletedBases | R1DeletedBasesPct | R1InsertedBases | R1InsertedBasesPct | R1MappedBases | R1MappedBasesPct | R1MappedReads | R1MappedReadsPct | R1MatchedBases | R1MatchedBasesPct | R1MismatchedBases | R1MismatchedBasesPct | R1PerfectBases | R1PerfectBasesPct | R1PerfectReads | R1PerfectReadsPct | R1Q20Bases | R1Q20BasesPct | R1SoftClippedBases | R1SoftClippedBasesPct | R1SoftClippedReads | R1SoftClippedReadsPct | R1UnmappedBases | R1UnmappedBasesPct | R1UnmappedReads | R1UnmappedReadsPct | R1UnpairedReads | R1UnpairedReadsPct | R1YieldBases | R1YieldReads | R2AlignedBases | R2AlignedBasesPct | R2AlignedReadLengthMean | R2AlignedReadLengthMedian | R2AlignedReadLengthMode | R2AlignedReadLengthStandardDeviation | R2DeletedBases | R2DeletedBasesPct | R2InsertedBases | R2InsertedBasesPct | R2MappedBases | R2MappedBasesPct | R2MappedReads | R2MappedReadsPct | R2MatchedBases | R2MatchedBasesPct | R2MismatchedBases | R2MismatchedBasesPct | R2PerfectBases | R2PerfectBasesPct | R2PerfectReads | R2PerfectReadsPct | R2Q20Bases | R2Q20BasesPct | R2SoftClippedBases | R2SoftClippedBasesPct | R2SoftClippedReads | R2SoftClippedReadsPct | R2UnmappedBases | R2UnmappedBasesPct | R2UnmappedReads | R2UnmappedReadsPct | R2UnpairedReads | R2UnpairedReadsPct | R2YieldBases | R2YieldReads | SoftClippedBases | SoftClippedBasesPct | SoftClippedReads | SoftClippedReadsPct | TotalPairs | TotalRecords | TotalSameChrPairs | TotalSameChrPairsPct | UnfilteredRecords | UnfilteredRecordsPct | UnmappedBases | UnmappedBasesPct | UnmappedReads | UnmappedReadsPct | UnpairedReads | UnpairedReadsPct | WgsAlignedReads | WgsAlignedReadsPct | WgsCalculatedAlignedReads | WgsCovDuplicateReads | WgsCovDuplicateReadsPct | WgsCoverageBases1 | WgsCoverageBases10 | WgsCoverageBases100 | WgsCoverageBases1000 | WgsCoverageBases1000Pct | WgsCoverageBases100Pct | WgsCoverageBases10Pct | WgsCoverageBases15 | WgsCoverageBases15Pct | WgsCoverageBases1Pct | WgsCoverageBases20 | WgsCoverageBases20Pct | WgsCoverageBases30 | WgsCoverageBases30Pct | WgsCoverageBases40 | WgsCoverageBases40Pct | WgsCoverageBases50 | WgsCoverageBases500 | WgsCoverageBases500Pct | WgsCoverageBases50Pct | WgsCoverageBases60 | WgsCoverageBases60Pct | WgsCoverageBases70 | WgsCoverageBases70Pct | WgsCoverageMean | WgsCoverageMedian | WgsCoverageStandardDeviation | WgsExpectedAlignedReads | WgsFilteredLowBaseQualityBases | WgsFilteredOverlapBases | WgsReadsPaired | WgsReadsPairedWithMates | WgsTotalReads | YieldBases | YieldReads |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ods20x_HG006_sup-PAY77227_0.ont | ont | 56,333,534,274.0 | 93.3 | 14,315.6 | 9,128.0 | 200.0 | 14,629.3 | 100.0 | 461,380,411.0 | 0.8 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | results/day/hg38/Ods20x_HG006_sup-PAY77227_0/align/ont/Ods20x_HG006_sup-PAY77227_0.ont.cram | 37,646,661,855.0 | 0.0 | 0.0 | 0.0 | 0.0 | 346,426,198.0 | 0.6 | 60,127,700,443.0 | 99.6 | 3,935,121.0 | 88.0 | 55,296,113,691.0 | 98.2 | 690,994,385.0 | 1.2 | 62,427,396.0 | 0.1 | 110,533.0 | 2.8 | 53,051,691,683.0 | 94.2 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3,794,166,169.0 | 6.3 | 3,365,019.0 | 85.5 | 0.0 | 4,472,406.0 | 0.0 | 0.0 | 4,472,406.0 | 100.0 | 240,525,735.0 | 0.4 | 537,285.0 | 12.0 | 0.0 | 0.0 | 3,935,121.0 | 88.0 | 3,935,121.0 | 0.0 | 0.0 | 2,924,129,614.0 | 2,760,215,499.0 | 3,256,294.0 | 333,825.0 | 0.0 | 0.1 | 89.0 | 2,279,999,466.0 | 73.6 | 94.3 | 1,259,543,880.0 | 40.6 | 86,928,105.0 | 2.8 | 15,850,998.0 | 0.5 | 10,168,382.0 | 629,134.0 | 0.0 | 0.3 | 7,325,922.0 | 0.2 | 5,635,512.0 | 0.2 | 18.1 | 18.0 | 31.4 | 3,935,121.0 | 0.0 | 0.0 | 0.0 | 0.0 | 4,472,406.0 | 60,368,226,178.0 | 4,472,406.0 |
| Ods30x_HG006_sup-PAY77227_0.ont | ont | 78,952,802,640.0 | 93.3 | 14,322.0 | 9,133.0 | 193.0 | 14,634.0 | 100.0 | 646,767,274.0 | 0.8 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | results/day/hg38/Ods30x_HG006_sup-PAY77227_0/align/ont/Ods30x_HG006_sup-PAY77227_0.ont.cram | 52,742,261,831.0 | 0.0 | 0.0 | 0.0 | 0.0 | 486,087,178.0 | 0.6 | 84,274,404,930.0 | 99.6 | 5,512,696.0 | 88.0 | 77,497,508,971.0 | 98.2 | 969,206,491.0 | 1.2 | 86,964,034.0 | 0.1 | 154,150.0 | 2.8 | 74,354,418,023.0 | 94.2 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 5,321,602,290.0 | 6.3 | 4,713,924.0 | 85.5 | 0.0 | 6,265,290.0 | 0.0 | 0.0 | 6,265,290.0 | 100.0 | 339,042,402.0 | 0.4 | 752,594.0 | 12.0 | 0.0 | 0.0 | 5,512,696.0 | 88.0 | 5,512,696.0 | 0.0 | 0.0 | 2,926,100,546.0 | 2,863,529,704.0 | 5,486,049.0 | 468,579.0 | 0.0 | 0.2 | 92.4 | 2,747,128,842.0 | 88.6 | 94.4 | 2,452,584,203.0 | 79.1 | 890,961,309.0 | 28.7 | 87,395,386.0 | 2.8 | 19,697,241.0 | 819,773.0 | 0.0 | 0.6 | 13,498,749.0 | 0.4 | 10,077,964.0 | 0.3 | 25.3 | 26.0 | 43.9 | 5,512,696.0 | 0.0 | 0.0 | 0.0 | 0.0 | 6,265,290.0 | 84,613,447,332.0 | 6,265,290.0 |