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MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

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MultiQC is published in Bioinformatics:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

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Final Multiqc Report

https://github.com/Daylily-Informatics/daylily (BRANCH:* sentb) (TAG:grape-ape.v1) (HASH:67dbf7bd)

Project/Budget: da-us-west-2d-giab-sownsamp-test
Budget @ Runtime: $43.608 of $200.0 spent ( 21.804%)
Spot Instances: c6i.32xlarge c7i.48xlarge c7i.metal-48xl m7i.48xlarge m7i.metal-48xl r7i.48xlarge r7i.metal-48xl
Spot Costs per hr: median: $2.99 mean: $2.97 ( avg cost per vcpu,per min: $0.000258112 )
FQ->BAM.sort avg Costs
BAM mrkdup avg Cost: 0 min, costing $0.00
Results Dir (GB): 154G

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Report generated on 2025-05-13, 05:31 UTC based on data in: /fsx/analysis_results/ubuntu/ont_ds/daylily/results/day/hg38

Controls Concordance Report

Concordance Stats For The GIAB HC Regions For This Sample.

Showing ⁰/₄₅ rows and ¹⁹/₁₉ columns.

mqc_id	SNPClass	Sample	TgtRegionSize	TN	FN	TP	FP	Fscore	Sensitivity-Recall	Specificity	FDR	PPV	Precision	AltId	CmpFootprint	AllVarMeanDP	CovBin	Aligner	SNVCaller
Ods5x_HG006_sup-PAY77227_0-ont-sentdont-All	All	Ods5x_HG006_sup-PAY77227_0	2,518,942,743.0	2,515,247,063.0	514,177.0	3,181,503.0	149,628.0	0.9	0.9	1.0	0.0	1.0	1.0	HG006	giabHC	-1.0	-2.0	ont	sentdont
Ods5x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50	DEL_50	Ods5x_HG006_sup-PAY77227_0	2,518,942,743.0	2,518,736,212.0	85,278.0	121,253.0	25,980.0	0.7	0.6	1.0	0.2	0.8	0.8	HG006	giabHC	-1.0	-2.0	ont	sentdont
Ods5x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50	DEL_gt50	Ods5x_HG006_sup-PAY77227_0	2,518,942,743.0	2,518,942,742.0	1.0	0.0	12.0		0.0	1.0	1.0	0.0	0.0	HG006	giabHC	-1.0	-2.0	ont	sentdont
Ods5x_HG006_sup-PAY77227_0-ont-sentdont-INS_50	INS_50	Ods5x_HG006_sup-PAY77227_0	2,518,942,743.0	2,518,738,602.0	84,679.0	119,462.0	22,656.0	0.7	0.6	1.0	0.2	0.8	0.8	HG006	giabHC	-1.0	-2.0	ont	sentdont
Ods5x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50	INS_gt50	Ods5x_HG006_sup-PAY77227_0	2,518,942,743.0	2,518,942,733.0	3.0	7.0	29.0	0.3	0.7	1.0	0.8	0.2	0.2	HG006	giabHC	-1.0	-2.0	ont	sentdont
Ods5x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50	Indel_50	Ods5x_HG006_sup-PAY77227_0	2,518,942,743.0	2,518,923,916.0	9,492.0	9,335.0	826.0	0.6	0.5	1.0	0.1	0.9	0.9	HG006	giabHC	-1.0	-2.0	ont	sentdont
Ods5x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50	Indel_gt50	Ods5x_HG006_sup-PAY77227_0	2,518,942,743.0	2,518,942,496.0	62.0	185.0	4.0	0.8	0.7	1.0	0.0	1.0	1.0	HG006	giabHC	-1.0	-2.0	ont	sentdont
Ods5x_HG006_sup-PAY77227_0-ont-sentdont-SNPts	SNPts	Ods5x_HG006_sup-PAY77227_0	2,518,942,743.0	2,516,726,506.0	222,252.0	1,993,985.0	68,832.0	0.9	0.9	1.0	0.0	1.0	1.0	HG006	giabHC	-1.0	-2.0	ont	sentdont
Ods5x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv	SNPtv	Ods5x_HG006_sup-PAY77227_0	2,518,942,743.0	2,517,893,057.0	112,410.0	937,276.0	31,289.0	0.9	0.9	1.0	0.0	1.0	1.0	HG006	giabHC	-1.0	-2.0	ont	sentdont
Ods10x_HG006_sup-PAY77227_0-ont-sentdont-All	All	Ods10x_HG006_sup-PAY77227_0	377,862,616.0	377,419,692.0	24,676.0	418,248.0	104,667.0	0.9	0.9	1.0	0.2	0.8	0.8	HG006	clinvar_genes	-1.0	-2.0	ont	sentdont
Ods10x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50	DEL_50	Ods10x_HG006_sup-PAY77227_0	377,862,616.0	377,837,036.0	6,194.0	19,386.0	16,824.0	0.6	0.8	1.0	0.5	0.5	0.5	HG006	clinvar_genes	-1.0	-2.0	ont	sentdont
Ods10x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50	DEL_gt50	Ods10x_HG006_sup-PAY77227_0	377,862,616.0	377,862,610.0	5.0	1.0	65.0	0.0	0.2	1.0	1.0	0.0	0.0	HG006	clinvar_genes	-1.0	-2.0	ont	sentdont
Ods10x_HG006_sup-PAY77227_0-ont-sentdont-INS_50	INS_50	Ods10x_HG006_sup-PAY77227_0	377,862,616.0	377,837,055.0	6,441.0	19,120.0	13,025.0	0.7	0.7	1.0	0.4	0.6	0.6	HG006	clinvar_genes	-1.0	-2.0	ont	sentdont
Ods10x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50	INS_gt50	Ods10x_HG006_sup-PAY77227_0	377,862,616.0	377,862,606.0	6.0	4.0	283.0	0.0	0.4	1.0	1.0	0.0	0.0	HG006	clinvar_genes	-1.0	-2.0	ont	sentdont
Ods10x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50	Indel_50	Ods10x_HG006_sup-PAY77227_0	377,862,616.0	377,860,146.0	781.0	1,689.0	2,198.0	0.5	0.7	1.0	0.6	0.4	0.4	HG006	clinvar_genes	-1.0	-2.0	ont	sentdont
Ods10x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50	Indel_gt50	Ods10x_HG006_sup-PAY77227_0	377,862,616.0	377,862,533.0	14.0	69.0	196.0	0.4	0.8	1.0	0.7	0.3	0.3	HG006	clinvar_genes	-1.0	-2.0	ont	sentdont
Ods10x_HG006_sup-PAY77227_0-ont-sentdont-SNPts	SNPts	Ods10x_HG006_sup-PAY77227_0	377,862,616.0	377,594,796.0	7,475.0	260,345.0	45,243.0	0.9	1.0	1.0	0.1	0.9	0.9	HG006	clinvar_genes	-1.0	-2.0	ont	sentdont
Ods10x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv	SNPtv	Ods10x_HG006_sup-PAY77227_0	377,862,616.0	377,741,222.0	3,760.0	117,634.0	26,833.0	0.9	1.0	1.0	0.2	0.8	0.8	HG006	clinvar_genes	-1.0	-2.0	ont	sentdont
Ods15x_HG006_sup-PAY77227_0-ont-sentdont-All	All	Ods15x_HG006_sup-PAY77227_0	3,088,286,401.0	3,084,448,522.0	125,165.0	3,712,714.0	1,315,480.0	0.8	1.0	1.0	0.3	0.7	0.7	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods15x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50	DEL_50	Ods15x_HG006_sup-PAY77227_0	3,088,286,401.0	3,088,066,552.0	42,089.0	177,760.0	172,301.0	0.6	0.8	1.0	0.5	0.5	0.5	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods15x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50	DEL_gt50	Ods15x_HG006_sup-PAY77227_0	3,088,286,401.0	3,088,286,362.0	37.0	2.0	583.0	0.0	0.1	1.0	1.0	0.0	0.0	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods15x_HG006_sup-PAY77227_0-ont-sentdont-INS_50	INS_50	Ods15x_HG006_sup-PAY77227_0	3,088,286,401.0	3,088,066,564.0	45,613.0	174,224.0	135,131.0	0.7	0.8	1.0	0.4	0.6	0.6	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods15x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50	INS_gt50	Ods15x_HG006_sup-PAY77227_0	3,088,286,401.0	3,088,286,359.0	26.0	16.0	2,497.0	0.0	0.4	1.0	1.0	0.0	0.0	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods15x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50	Indel_50	Ods15x_HG006_sup-PAY77227_0	3,088,286,401.0	3,088,256,363.0	6,482.0	23,556.0	32,680.0	0.5	0.8	1.0	0.6	0.4	0.4	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods15x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50	Indel_gt50	Ods15x_HG006_sup-PAY77227_0	3,088,286,401.0	3,088,285,364.0	95.0	942.0	2,199.0	0.5	0.9	1.0	0.7	0.3	0.3	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods15x_HG006_sup-PAY77227_0-ont-sentdont-SNPts	SNPts	Ods15x_HG006_sup-PAY77227_0	3,088,286,401.0	3,086,002,285.0	19,938.0	2,264,178.0	514,709.0	0.9	1.0	1.0	0.2	0.8	0.8	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods15x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv	SNPtv	Ods15x_HG006_sup-PAY77227_0	3,088,286,401.0	3,087,203,480.0	10,885.0	1,072,036.0	455,380.0	0.8	1.0	1.0	0.3	0.7	0.7	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods20x_HG006_sup-PAY77227_0-ont-sentdont-All	All	Ods20x_HG006_sup-PAY77227_0	3,088,286,401.0	3,084,448,498.0	96,988.0	3,740,915.0	1,364,795.0	0.8	1.0	1.0	0.3	0.7	0.7	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods20x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50	DEL_50	Ods20x_HG006_sup-PAY77227_0	3,088,286,401.0	3,088,068,722.0	36,186.0	181,493.0	175,231.0	0.6	0.8	1.0	0.5	0.5	0.5	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods20x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50	DEL_gt50	Ods20x_HG006_sup-PAY77227_0	3,088,286,401.0	3,088,286,362.0	37.0	2.0	698.0	0.0	0.1	1.0	1.0	0.0	0.0	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods20x_HG006_sup-PAY77227_0-ont-sentdont-INS_50	INS_50	Ods20x_HG006_sup-PAY77227_0	3,088,286,401.0	3,088,068,080.0	40,388.0	177,933.0	137,494.0	0.7	0.8	1.0	0.4	0.6	0.6	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods20x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50	INS_gt50	Ods20x_HG006_sup-PAY77227_0	3,088,286,401.0	3,088,286,359.0	27.0	15.0	2,499.0	0.0	0.4	1.0	1.0	0.0	0.0	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods20x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50	Indel_50	Ods20x_HG006_sup-PAY77227_0	3,088,286,401.0	3,088,252,730.0	5,913.0	27,758.0	40,937.0	0.5	0.8	1.0	0.6	0.4	0.4	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods20x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50	Indel_gt50	Ods20x_HG006_sup-PAY77227_0	3,088,286,401.0	3,088,285,268.0	85.0	1,048.0	2,513.0	0.4	0.9	1.0	0.7	0.3	0.3	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods20x_HG006_sup-PAY77227_0-ont-sentdont-SNPts	SNPts	Ods20x_HG006_sup-PAY77227_0	3,088,286,401.0	3,086,002,292.0	8,994.0	2,275,115.0	527,357.0	0.9	1.0	1.0	0.2	0.8	0.8	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods20x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv	SNPtv	Ods20x_HG006_sup-PAY77227_0	3,088,286,401.0	3,087,203,492.0	5,358.0	1,077,551.0	478,066.0	0.8	1.0	1.0	0.3	0.7	0.7	HG006	hg38	-1.0	-2.0	ont	sentdont
Ods30x_HG006_sup-PAY77227_0-ont-sentdont-All	All	Ods30x_HG006_sup-PAY77227_0	331,588,110.0	331,188,998.0	1,405.0	397,707.0	717.0	1.0	1.0	1.0	0.0	1.0	1.0	HG006	giabHC_x_ultima_x_clinvar	-1.0	-2.0	ont	sentdont
Ods30x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50	DEL_50	Ods30x_HG006_sup-PAY77227_0	331,588,110.0	331,570,693.0	446.0	16,971.0	145.0	1.0	1.0	1.0	0.0	1.0	1.0	HG006	giabHC_x_ultima_x_clinvar	-1.0	-2.0	ont	sentdont
Ods30x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50	DEL_gt50	Ods30x_HG006_sup-PAY77227_0	331,588,110.0	331,588,110.0	0.0	0.0	0.0			1.0				HG006	giabHC_x_ultima_x_clinvar	-1.0	-2.0	ont	sentdont
Ods30x_HG006_sup-PAY77227_0-ont-sentdont-INS_50	INS_50	Ods30x_HG006_sup-PAY77227_0	331,588,110.0	331,571,741.0	432.0	15,937.0	93.0	1.0	1.0	1.0	0.0	1.0	1.0	HG006	giabHC_x_ultima_x_clinvar	-1.0	-2.0	ont	sentdont
Ods30x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50	INS_gt50	Ods30x_HG006_sup-PAY77227_0	331,588,110.0	331,588,109.0	0.0	1.0	0.0	1.0	1.0	1.0	0.0	1.0	1.0	HG006	giabHC_x_ultima_x_clinvar	-1.0	-2.0	ont	sentdont
Ods30x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50	Indel_50	Ods30x_HG006_sup-PAY77227_0	331,588,110.0	331,586,680.0	40.0	1,390.0	30.0	1.0	1.0	1.0	0.0	1.0	1.0	HG006	giabHC_x_ultima_x_clinvar	-1.0	-2.0	ont	sentdont
Ods30x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50	Indel_gt50	Ods30x_HG006_sup-PAY77227_0	331,588,110.0	331,588,087.0	1.0	22.0	0.0	1.0	1.0	1.0	0.0	1.0	1.0	HG006	giabHC_x_ultima_x_clinvar	-1.0	-2.0	ont	sentdont
Ods30x_HG006_sup-PAY77227_0-ont-sentdont-SNPts	SNPts	Ods30x_HG006_sup-PAY77227_0	331,588,110.0	331,336,502.0	324.0	251,284.0	290.0	1.0	1.0	1.0	0.0	1.0	1.0	HG006	giabHC_x_ultima_x_clinvar	-1.0	-2.0	ont	sentdont
Ods30x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv	SNPtv	Ods30x_HG006_sup-PAY77227_0	331,588,110.0	331,475,846.0	162.0	112,102.0	159.0	1.0	1.0	1.0	0.0	1.0	1.0	HG006	giabHC_x_ultima_x_clinvar	-1.0	-2.0	ont	sentdont

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: giab_concordance-plot_table

Sort	Column	Description	ID
\|\|	SNPClass	SNPClass	`SNPClass`
\|\|	Sample	Sample	`Sample`
\|\|	TgtRegionSize	TgtRegionSize	`TgtRegionSize`
\|\|	TN	TN	`TN`
\|\|	FN	FN	`FN`
\|\|	TP	TP	`TP`
\|\|	FP	FP	`FP`
\|\|	Fscore	Fscore	`Fscore`
\|\|	Sensitivity-Recall	Sensitivity-Recall	`Sensitivity_Recall`
\|\|	Specificity	Specificity	`Specificity`
\|\|	FDR	FDR	`FDR`
\|\|	PPV	PPV	`PPV`
\|\|	Precision	Precision	`Precision`
\|\|	AltId	AltId	`AltId`
\|\|	CmpFootprint	CmpFootprint	`CmpFootprint`
\|\|	AllVarMeanDP	AllVarMeanDP	`AllVarMeanDP`
\|\|	CovBin	CovBin	`CovBin`
\|\|	Aligner	Aligner	`Aligner`
\|\|	SNVCaller	SNVCaller	`SNVCaller`

Rules Benchmark Data2

Showing ⁰/₂₅ rows and ²³/₂₃ columns.

combined_rule	sample	rule	s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost	rule_prefix	rule_suffix
alignstats_smmary_compile-all.	all.	alignstats_smmary_compile	0.7	0:00:00	13.9	30.5	6.9	7.4	3.7	0.0	0.0	0.0	ip-10-0-0-216	52.11.194.193	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	2.0	0.0	alignstats_smmary_compile	NA
alignstats_summary-all.	all.	alignstats_summary	0.3	0:00:00	15.3	38.6	6.3	7.0	0.0	0.0	0.0	0.0	ip-10-0-0-216	52.11.194.193	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	alignstats_summary	NA
final_multiqc2-DAY_all.	DAY_all.	final_multiqc2	11.0	0:00:10	138.1	2,698.1	132.8	134.5	1,973.6	12.9	59.2	6.7	ip-10-0-0-216	52.11.194.193	8.0	0.6	r7i.2xlarge	us-west-2d	0.2	4.0	0.0	final_multiqc2	NA
ont.alignstats-Ods20x_HG006_sup-PAY77227_0.	Ods20x_HG006_sup-PAY77227_0.	ont.alignstats	286.7	0:04:46	9,325.7	11,434.2	9,063.0	9,063.6	627.0	0.0	271.9	780.5	i192-dy-all-1	10.0.1.128	192.0	2.7	c7i.48xlarge	us-west-2d	3.0	32.0	0.0	ont	alignstats
ont.alignstats-Ods30x_HG006_sup-PAY77227_0.	Ods30x_HG006_sup-PAY77227_0.	ont.alignstats	390.6	0:06:30	10,455.6	12,499.2	10,475.5	10,476.2	1,362.1	0.0	297.0	1,161.3	i192-dy-all-1	10.0.1.128	192.0	3.0	c7i.48xlarge	us-west-2d	3.0	32.0	0.1	ont	alignstats
ont.sentdont.1-24-Ods5x_HG006_sup-PAY77227_0.	Ods5x_HG006_sup-PAY77227_0.	ont.sentdont.1-24	3,990.5	1:06:30	38,996.0	50,226.1	38,969.0	38,972.8	19,382.1	13,408.2	18,343.8	672,821.9	i192-dy-all-3	10.0.1.102	192.0	168.6	c7i.48xlarge	us-west-2d	3.0	192.0	3.3	ont	sentdont.1-24
ont.sentdont.1-24-Ods10x_HG006_sup-PAY77227_0.	Ods10x_HG006_sup-PAY77227_0.	ont.sentdont.1-24	2,391.1	0:39:51	39,000.3	50,223.1	39,087.4	39,092.8	26,761.6	7,476.2	17,611.7	364,350.0	i192-dy-all-1	10.0.1.76	192.0	152.4	c7i.48xlarge	us-west-2d	3.0	192.0	2.0	ont	sentdont.1-24
ont.sentdont.1-24-Ods15x_HG006_sup-PAY77227_0.	Ods15x_HG006_sup-PAY77227_0.	ont.sentdont.1-24	1,710.6	0:28:30	38,990.1	50,223.1	38,997.2	39,002.4	32,709.4	4,349.7	16,070.1	230,807.8	i192-dy-all-4	10.0.1.145	192.0	134.9	c7i.48xlarge	us-west-2d	3.0	192.0	1.4	ont	sentdont.1-24
ont.sentdont.1-24-Ods20x_HG006_sup-PAY77227_0.	Ods20x_HG006_sup-PAY77227_0.	ont.sentdont.1-24	1,643.3	0:27:23	38,994.6	50,223.1	38,983.9	38,989.2	40,861.8	4,730.7	13,830.0	192,781.2	i192-dy-all-14	10.0.1.33	192.0	117.3	m7i.metal-48xl	us-west-2d	3.0	192.0	1.4	ont	sentdont.1-24
ont.sentdont.1-24-Ods30x_HG006_sup-PAY77227_0.	Ods30x_HG006_sup-PAY77227_0.	ont.sentdont.1-24	1,528.2	0:25:28	39,002.4	50,220.6	39,072.5	39,077.8	54,878.9	5,040.3	14,220.3	183,947.4	i192-dy-all-3	10.0.1.51	192.0	120.4	c7i.metal-48xl	us-west-2d	2.6	192.0	1.1	ont	sentdont.1-24
ont.sentdont.concat.fofn-Ods5x_HG006_sup-PAY77227_0.	Ods5x_HG006_sup-PAY77227_0.	ont.sentdont.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-216	52.11.194.193	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ont	sentdont.concat.fofn
ont.sentdont.concat.fofn-Ods10x_HG006_sup-PAY77227_0.	Ods10x_HG006_sup-PAY77227_0.	ont.sentdont.concat.fofn	0.4	0:00:00	15.3	38.7	6.4	6.8	0.0	0.0	0.0	0.0	ip-10-0-0-216	52.11.194.193	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ont	sentdont.concat.fofn
ont.sentdont.concat.fofn-Ods15x_HG006_sup-PAY77227_0.	Ods15x_HG006_sup-PAY77227_0.	ont.sentdont.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-216	52.11.194.193	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ont	sentdont.concat.fofn
ont.sentdont.concat.fofn-Ods20x_HG006_sup-PAY77227_0.	Ods20x_HG006_sup-PAY77227_0.	ont.sentdont.concat.fofn	21.0	0:00:21	7.0	23.1	1.0	1.4	1.8	0.0	0.0	0.0	ip-10-0-0-216	52.11.194.193	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ont	sentdont.concat.fofn
ont.sentdont.concat.fofn-Ods30x_HG006_sup-PAY77227_0.	Ods30x_HG006_sup-PAY77227_0.	ont.sentdont.concat.fofn	12.4	0:00:12	8.9	26.5	2.2	2.7	2.6	0.0	0.1	0.0	ip-10-0-0-216	52.11.194.193	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ont	sentdont.concat.fofn
ont.sentdont.concordance-Ods5x_HG006_sup-PAY77227_0.	Ods5x_HG006_sup-PAY77227_0.	ont.sentdont.concordance	2,729.4	0:45:29	60,118.7	364,649.9	60,156.0	60,157.3	1,360.3	12,594.3	116.7	567.7	i192-dy-all-1	10.0.1.73	192.0	0.2	c7i.metal-48xl	us-west-2d	2.6	96.0	1.0	ont	sentdont.concordance
ont.sentdont.concordance-Ods10x_HG006_sup-PAY77227_0.	Ods10x_HG006_sup-PAY77227_0.	ont.sentdont.concordance	2,698.8	0:44:58	90,369.3	359,201.0	90,422.0	90,423.1	3,226.6	11,518.6	128.6	549.0	i192-dy-all-4	10.0.1.145	192.0	0.2	c7i.48xlarge	us-west-2d	3.0	96.0	1.1	ont	sentdont.concordance
ont.sentdont.concordance-Ods15x_HG006_sup-PAY77227_0.	Ods15x_HG006_sup-PAY77227_0.	ont.sentdont.concordance	2,512.4	0:41:52	102,426.2	359,201.0	102,467.8	102,468.9	3,079.7	10,998.7	126.7	616.7	i192-dy-all-4	10.0.1.145	192.0	0.2	c7i.48xlarge	us-west-2d	3.0	96.0	1.0	ont	sentdont.concordance
ont.sentdont.concordance-Ods20x_HG006_sup-PAY77227_0.	Ods20x_HG006_sup-PAY77227_0.	ont.sentdont.concordance	2,411.3	0:40:11	85,783.4	364,649.9	85,842.6	85,843.8	4,522.1	10,932.3	80.2	447.8	i192-dy-all-4	10.0.1.66	192.0	0.2	c7i.metal-48xl	us-west-2d	2.6	96.0	0.9	ont	sentdont.concordance
ont.sentdont.concordance-Ods30x_HG006_sup-PAY77227_0.	Ods30x_HG006_sup-PAY77227_0.	ont.sentdont.concordance	2,696.6	0:44:56	97,772.5	719,838.3	97,788.1	97,789.2	5,792.8	11,074.8	94.3	6.7	i192-dy-all-5	10.0.1.193	192.0	0.0	m7i.metal-48xl	us-west-2d	3.0	96.0	1.1	ont	sentdont.concordance
ont.sentdont.merge-Ods5x_HG006_sup-PAY77227_0.	Ods5x_HG006_sup-PAY77227_0.	ont.sentdont.merge	67.1	0:01:07	79.1	13,418.8	82.4	82.8	0.0	494.7	142.8	103.2	i192-dy-all-1	10.0.1.73	192.0	1.5	c7i.metal-48xl	us-west-2d	2.6	64.0	0.0	ont	sentdont.merge
ont.sentdont.merge-Ods10x_HG006_sup-PAY77227_0.	Ods10x_HG006_sup-PAY77227_0.	ont.sentdont.merge	41.9	0:00:41	78.9	12,139.0	82.2	82.7	6.0	201.5	84.5	39.3	i192-dy-all-9	10.0.1.108	192.0	0.9	c7i.metal-48xl	us-west-2d	2.6	64.0	0.0	ont	sentdont.merge
ont.sentdont.merge-Ods15x_HG006_sup-PAY77227_0.	Ods15x_HG006_sup-PAY77227_0.	ont.sentdont.merge	30.7	0:00:30	78.8	12,523.0	83.2	83.4	6.0	238.4	144.6	46.2	i192-dy-all-4	10.0.1.145	192.0	1.5	c7i.48xlarge	us-west-2d	3.0	64.0	0.0	ont	sentdont.merge
ont.sentdont.merge-Ods20x_HG006_sup-PAY77227_0.	Ods20x_HG006_sup-PAY77227_0.	ont.sentdont.merge	290.6	0:04:50	91.2	13,438.7	108.9	109.2	477.9	727.3	21.5	0.0	i192-dy-all-8	10.0.1.137	192.0	0.0	m7i.metal-48xl	us-west-2d	3.0	64.0	0.1	ont	sentdont.merge
ont.sentdont.merge-Ods30x_HG006_sup-PAY77227_0.	Ods30x_HG006_sup-PAY77227_0.	ont.sentdont.merge	81.7	0:01:21	88.1	13,501.9	110.0	110.5	107.7	724.5	49.4	7.4	i192-dy-all-3	10.0.1.51	192.0	0.1	c7i.metal-48xl	us-west-2d	2.6	64.0	0.0	ont	sentdont.merge

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: rules_benchmark_data2-section-plot_table

Sort	Column	Description	ID
\|\|	sample	sample	`sample`
\|\|	rule	rule	`rule`
\|\|	s	s	`s`
\|\|	h:m:s	h:m:s	`h_m_s`
\|\|	max_rss	max_rss	`max_rss`
\|\|	max_vms	max_vms	`max_vms`
\|\|	max_uss	max_uss	`max_uss`
\|\|	max_pss	max_pss	`max_pss`
\|\|	io_in	io_in	`io_in`
\|\|	io_out	io_out	`io_out`
\|\|	mean_load	mean_load	`mean_load`
\|\|	cpu_time	cpu_time	`cpu_time`
\|\|	hostname	hostname	`hostname`
\|\|	ip	ip	`ip`
\|\|	nproc	nproc	`nproc`
\|\|	cpu_efficiency	cpu_efficiency	`cpu_efficiency`
\|\|	instance_type	instance_type	`instance_type`
\|\|	region_az	region_az	`region_az`
\|\|	spot_cost	spot_cost	`spot_cost`
\|\|	snakemake_threads	snakemake_threads	`snakemake_threads`
\|\|	task_cost	task_cost	`task_cost`
\|\|	rule_prefix	rule_prefix	`rule_prefix`
\|\|	rule_suffix	rule_suffix	`rule_suffix`

Alignstats Data

Alignstats Data.

Showing ⁰/₂ rows and ¹⁶⁶/₁₆₆ columns.

sample	aligner	AlignedBases	AlignedBasesPct	AlignedReadLengthMean	AlignedReadLengthMedian	AlignedReadLengthMode	AlignedReadLengthStandardDeviation	ChimericReadPairPct	DeletedBases	DeletedBasesPct	DuplicateBases	DuplicateBasesPct	DuplicateReads	DuplicateReadsPct	FilteredRecords	FilteredRecordsPct	InputFileName	InputFileSize	InsertSizeMean	InsertSizeMedian	InsertSizeMode	InsertSizeStandardDeviation	InsertedBases	InsertedBasesPct	MappedBases	MappedBasesPct	MappedReads	MappedReadsPct	MatchedBases	MatchedBasesPct	MismatchedBases	MismatchedBasesPct	PerfectBases	PerfectBasesPct	PerfectReads	PerfectReadsPct	Q20Bases	Q20BasesPct	R1AlignedBases	R1AlignedBasesPct	R1AlignedReadLengthMean	R1AlignedReadLengthMedian	R1AlignedReadLengthMode	R1AlignedReadLengthStandardDeviation	R1DeletedBases	R1DeletedBasesPct	R1InsertedBases	R1InsertedBasesPct	R1MappedBases	R1MappedBasesPct	R1MappedReads	R1MappedReadsPct	R1MatchedBases	R1MatchedBasesPct	R1MismatchedBases	R1MismatchedBasesPct	R1PerfectBases	R1PerfectBasesPct	R1PerfectReads	R1PerfectReadsPct	R1Q20Bases	R1Q20BasesPct	R1SoftClippedBases	R1SoftClippedBasesPct	R1SoftClippedReads	R1SoftClippedReadsPct	R1UnmappedBases	R1UnmappedBasesPct	R1UnmappedReads	R1UnmappedReadsPct	R1UnpairedReads	R1UnpairedReadsPct	R1YieldBases	R1YieldReads	R2AlignedBases	R2AlignedBasesPct	R2AlignedReadLengthMean	R2AlignedReadLengthMedian	R2AlignedReadLengthMode	R2AlignedReadLengthStandardDeviation	R2DeletedBases	R2DeletedBasesPct	R2InsertedBases	R2InsertedBasesPct	R2MappedBases	R2MappedBasesPct	R2MappedReads	R2MappedReadsPct	R2MatchedBases	R2MatchedBasesPct	R2MismatchedBases	R2MismatchedBasesPct	R2PerfectBases	R2PerfectBasesPct	R2PerfectReads	R2PerfectReadsPct	R2Q20Bases	R2Q20BasesPct	R2SoftClippedBases	R2SoftClippedBasesPct	R2SoftClippedReads	R2SoftClippedReadsPct	R2UnmappedBases	R2UnmappedBasesPct	R2UnmappedReads	R2UnmappedReadsPct	R2UnpairedReads	R2UnpairedReadsPct	R2YieldBases	R2YieldReads	SoftClippedBases	SoftClippedBasesPct	SoftClippedReads	SoftClippedReadsPct	TotalPairs	TotalRecords	TotalSameChrPairs	TotalSameChrPairsPct	UnfilteredRecords	UnfilteredRecordsPct	UnmappedBases	UnmappedBasesPct	UnmappedReads	UnmappedReadsPct	UnpairedReads	UnpairedReadsPct	WgsAlignedReads	WgsAlignedReadsPct	WgsCalculatedAlignedReads	WgsCovDuplicateReads	WgsCovDuplicateReadsPct	WgsCoverageBases1	WgsCoverageBases10	WgsCoverageBases100	WgsCoverageBases1000	WgsCoverageBases1000Pct	WgsCoverageBases100Pct	WgsCoverageBases10Pct	WgsCoverageBases15	WgsCoverageBases15Pct	WgsCoverageBases1Pct	WgsCoverageBases20	WgsCoverageBases20Pct	WgsCoverageBases30	WgsCoverageBases30Pct	WgsCoverageBases40	WgsCoverageBases40Pct	WgsCoverageBases50	WgsCoverageBases500	WgsCoverageBases500Pct	WgsCoverageBases50Pct	WgsCoverageBases60	WgsCoverageBases60Pct	WgsCoverageBases70	WgsCoverageBases70Pct	WgsCoverageMean	WgsCoverageMedian	WgsCoverageStandardDeviation	WgsExpectedAlignedReads	WgsFilteredLowBaseQualityBases	WgsFilteredOverlapBases	WgsReadsPaired	WgsReadsPairedWithMates	WgsTotalReads	YieldBases	YieldReads
Ods20x_HG006_sup-PAY77227_0.ont	ont	56,333,534,274.0	93.3	14,315.6	9,128.0	200.0	14,629.3	100.0	461,380,411.0	0.8	0.0	0.0	0.0	0.0	0.0	0.0	results/day/hg38/Ods20x_HG006_sup-PAY77227_0/align/ont/Ods20x_HG006_sup-PAY77227_0.ont.cram	37,646,661,855.0	0.0	0.0	0.0	0.0	346,426,198.0	0.6	60,127,700,443.0	99.6	3,935,121.0	88.0	55,296,113,691.0	98.2	690,994,385.0	1.2	62,427,396.0	0.1	110,533.0	2.8	53,051,691,683.0	94.2	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	3,794,166,169.0	6.3	3,365,019.0	85.5	0.0	4,472,406.0	0.0	0.0	4,472,406.0	100.0	240,525,735.0	0.4	537,285.0	12.0	0.0	0.0	3,935,121.0	88.0	3,935,121.0	0.0	0.0	2,924,129,614.0	2,760,215,499.0	3,256,294.0	333,825.0	0.0	0.1	89.0	2,279,999,466.0	73.6	94.3	1,259,543,880.0	40.6	86,928,105.0	2.8	15,850,998.0	0.5	10,168,382.0	629,134.0	0.0	0.3	7,325,922.0	0.2	5,635,512.0	0.2	18.1	18.0	31.4	3,935,121.0	0.0	0.0	0.0	0.0	4,472,406.0	60,368,226,178.0	4,472,406.0
Ods30x_HG006_sup-PAY77227_0.ont	ont	78,952,802,640.0	93.3	14,322.0	9,133.0	193.0	14,634.0	100.0	646,767,274.0	0.8	0.0	0.0	0.0	0.0	0.0	0.0	results/day/hg38/Ods30x_HG006_sup-PAY77227_0/align/ont/Ods30x_HG006_sup-PAY77227_0.ont.cram	52,742,261,831.0	0.0	0.0	0.0	0.0	486,087,178.0	0.6	84,274,404,930.0	99.6	5,512,696.0	88.0	77,497,508,971.0	98.2	969,206,491.0	1.2	86,964,034.0	0.1	154,150.0	2.8	74,354,418,023.0	94.2	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	5,321,602,290.0	6.3	4,713,924.0	85.5	0.0	6,265,290.0	0.0	0.0	6,265,290.0	100.0	339,042,402.0	0.4	752,594.0	12.0	0.0	0.0	5,512,696.0	88.0	5,512,696.0	0.0	0.0	2,926,100,546.0	2,863,529,704.0	5,486,049.0	468,579.0	0.0	0.2	92.4	2,747,128,842.0	88.6	94.4	2,452,584,203.0	79.1	890,961,309.0	28.7	87,395,386.0	2.8	19,697,241.0	819,773.0	0.0	0.6	13,498,749.0	0.4	10,077,964.0	0.3	25.3	26.0	43.9	5,512,696.0	0.0	0.0	0.0	0.0	6,265,290.0	84,613,447,332.0	6,265,290.0

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