Final Multiqc Report

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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.25.2

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Final Multiqc Report

        https://github.com/Daylily-Informatics/daylily (BRANCH:* sentb) (TAG:grape-ape.v1) (HASH:67dbf7bd)
        Project/Budget
        da-us-west-2d-giab-sownsamp-test
        Budget @ Runtime
        $43.608 of $200.0 spent ( 21.804%)
        Spot Instances
        c6i.32xlarge c7i.48xlarge c7i.metal-48xl m7i.48xlarge m7i.metal-48xl r7i.48xlarge r7i.metal-48xl
        Spot Costs per hr
        median: $2.99 mean: $2.97 ( avg cost per vcpu,per min: $0.000258112 )
        FQ->BAM.sort avg Costs
        BAM mrkdup avg Cost
        0 min, costing $0.00
        Results Dir (GB)
        154G

        Report generated on 2025-05-13, 05:31 UTC based on data in: /fsx/analysis_results/ubuntu/ont_ds/daylily/results/day/hg38


        Controls Concordance Report

        Concordance Stats For The GIAB HC Regions For This Sample.

        Showing 0/45 rows and 19/19 columns.
        mqc_idSNPClassSampleTgtRegionSizeTNFNTPFPFscoreSensitivity-RecallSpecificityFDRPPVPrecisionAltIdCmpFootprintAllVarMeanDPCovBinAlignerSNVCaller
        Ods5x_HG006_sup-PAY77227_0-ont-sentdont-All
        All
        Ods5x_HG006_sup-PAY77227_0
        2,518,942,743.0
        2,515,247,063.0
        514,177.0
        3,181,503.0
        149,628.0
        0.9
        0.9
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC
        -1.0
        -2.0
        ont
        sentdont
        Ods5x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50
        DEL_50
        Ods5x_HG006_sup-PAY77227_0
        2,518,942,743.0
        2,518,736,212.0
        85,278.0
        121,253.0
        25,980.0
        0.7
        0.6
        1.0
        0.2
        0.8
        0.8
        HG006
        giabHC
        -1.0
        -2.0
        ont
        sentdont
        Ods5x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50
        DEL_gt50
        Ods5x_HG006_sup-PAY77227_0
        2,518,942,743.0
        2,518,942,742.0
        1.0
        0.0
        12.0
        0.0
        1.0
        1.0
        0.0
        0.0
        HG006
        giabHC
        -1.0
        -2.0
        ont
        sentdont
        Ods5x_HG006_sup-PAY77227_0-ont-sentdont-INS_50
        INS_50
        Ods5x_HG006_sup-PAY77227_0
        2,518,942,743.0
        2,518,738,602.0
        84,679.0
        119,462.0
        22,656.0
        0.7
        0.6
        1.0
        0.2
        0.8
        0.8
        HG006
        giabHC
        -1.0
        -2.0
        ont
        sentdont
        Ods5x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50
        INS_gt50
        Ods5x_HG006_sup-PAY77227_0
        2,518,942,743.0
        2,518,942,733.0
        3.0
        7.0
        29.0
        0.3
        0.7
        1.0
        0.8
        0.2
        0.2
        HG006
        giabHC
        -1.0
        -2.0
        ont
        sentdont
        Ods5x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50
        Indel_50
        Ods5x_HG006_sup-PAY77227_0
        2,518,942,743.0
        2,518,923,916.0
        9,492.0
        9,335.0
        826.0
        0.6
        0.5
        1.0
        0.1
        0.9
        0.9
        HG006
        giabHC
        -1.0
        -2.0
        ont
        sentdont
        Ods5x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50
        Indel_gt50
        Ods5x_HG006_sup-PAY77227_0
        2,518,942,743.0
        2,518,942,496.0
        62.0
        185.0
        4.0
        0.8
        0.7
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC
        -1.0
        -2.0
        ont
        sentdont
        Ods5x_HG006_sup-PAY77227_0-ont-sentdont-SNPts
        SNPts
        Ods5x_HG006_sup-PAY77227_0
        2,518,942,743.0
        2,516,726,506.0
        222,252.0
        1,993,985.0
        68,832.0
        0.9
        0.9
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC
        -1.0
        -2.0
        ont
        sentdont
        Ods5x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv
        SNPtv
        Ods5x_HG006_sup-PAY77227_0
        2,518,942,743.0
        2,517,893,057.0
        112,410.0
        937,276.0
        31,289.0
        0.9
        0.9
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC
        -1.0
        -2.0
        ont
        sentdont
        Ods10x_HG006_sup-PAY77227_0-ont-sentdont-All
        All
        Ods10x_HG006_sup-PAY77227_0
        377,862,616.0
        377,419,692.0
        24,676.0
        418,248.0
        104,667.0
        0.9
        0.9
        1.0
        0.2
        0.8
        0.8
        HG006
        clinvar_genes
        -1.0
        -2.0
        ont
        sentdont
        Ods10x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50
        DEL_50
        Ods10x_HG006_sup-PAY77227_0
        377,862,616.0
        377,837,036.0
        6,194.0
        19,386.0
        16,824.0
        0.6
        0.8
        1.0
        0.5
        0.5
        0.5
        HG006
        clinvar_genes
        -1.0
        -2.0
        ont
        sentdont
        Ods10x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50
        DEL_gt50
        Ods10x_HG006_sup-PAY77227_0
        377,862,616.0
        377,862,610.0
        5.0
        1.0
        65.0
        0.0
        0.2
        1.0
        1.0
        0.0
        0.0
        HG006
        clinvar_genes
        -1.0
        -2.0
        ont
        sentdont
        Ods10x_HG006_sup-PAY77227_0-ont-sentdont-INS_50
        INS_50
        Ods10x_HG006_sup-PAY77227_0
        377,862,616.0
        377,837,055.0
        6,441.0
        19,120.0
        13,025.0
        0.7
        0.7
        1.0
        0.4
        0.6
        0.6
        HG006
        clinvar_genes
        -1.0
        -2.0
        ont
        sentdont
        Ods10x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50
        INS_gt50
        Ods10x_HG006_sup-PAY77227_0
        377,862,616.0
        377,862,606.0
        6.0
        4.0
        283.0
        0.0
        0.4
        1.0
        1.0
        0.0
        0.0
        HG006
        clinvar_genes
        -1.0
        -2.0
        ont
        sentdont
        Ods10x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50
        Indel_50
        Ods10x_HG006_sup-PAY77227_0
        377,862,616.0
        377,860,146.0
        781.0
        1,689.0
        2,198.0
        0.5
        0.7
        1.0
        0.6
        0.4
        0.4
        HG006
        clinvar_genes
        -1.0
        -2.0
        ont
        sentdont
        Ods10x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50
        Indel_gt50
        Ods10x_HG006_sup-PAY77227_0
        377,862,616.0
        377,862,533.0
        14.0
        69.0
        196.0
        0.4
        0.8
        1.0
        0.7
        0.3
        0.3
        HG006
        clinvar_genes
        -1.0
        -2.0
        ont
        sentdont
        Ods10x_HG006_sup-PAY77227_0-ont-sentdont-SNPts
        SNPts
        Ods10x_HG006_sup-PAY77227_0
        377,862,616.0
        377,594,796.0
        7,475.0
        260,345.0
        45,243.0
        0.9
        1.0
        1.0
        0.1
        0.9
        0.9
        HG006
        clinvar_genes
        -1.0
        -2.0
        ont
        sentdont
        Ods10x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv
        SNPtv
        Ods10x_HG006_sup-PAY77227_0
        377,862,616.0
        377,741,222.0
        3,760.0
        117,634.0
        26,833.0
        0.9
        1.0
        1.0
        0.2
        0.8
        0.8
        HG006
        clinvar_genes
        -1.0
        -2.0
        ont
        sentdont
        Ods15x_HG006_sup-PAY77227_0-ont-sentdont-All
        All
        Ods15x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,084,448,522.0
        125,165.0
        3,712,714.0
        1,315,480.0
        0.8
        1.0
        1.0
        0.3
        0.7
        0.7
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods15x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50
        DEL_50
        Ods15x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,088,066,552.0
        42,089.0
        177,760.0
        172,301.0
        0.6
        0.8
        1.0
        0.5
        0.5
        0.5
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods15x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50
        DEL_gt50
        Ods15x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,088,286,362.0
        37.0
        2.0
        583.0
        0.0
        0.1
        1.0
        1.0
        0.0
        0.0
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods15x_HG006_sup-PAY77227_0-ont-sentdont-INS_50
        INS_50
        Ods15x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,088,066,564.0
        45,613.0
        174,224.0
        135,131.0
        0.7
        0.8
        1.0
        0.4
        0.6
        0.6
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods15x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50
        INS_gt50
        Ods15x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,088,286,359.0
        26.0
        16.0
        2,497.0
        0.0
        0.4
        1.0
        1.0
        0.0
        0.0
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods15x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50
        Indel_50
        Ods15x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,088,256,363.0
        6,482.0
        23,556.0
        32,680.0
        0.5
        0.8
        1.0
        0.6
        0.4
        0.4
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods15x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50
        Indel_gt50
        Ods15x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,088,285,364.0
        95.0
        942.0
        2,199.0
        0.5
        0.9
        1.0
        0.7
        0.3
        0.3
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods15x_HG006_sup-PAY77227_0-ont-sentdont-SNPts
        SNPts
        Ods15x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,086,002,285.0
        19,938.0
        2,264,178.0
        514,709.0
        0.9
        1.0
        1.0
        0.2
        0.8
        0.8
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods15x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv
        SNPtv
        Ods15x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,087,203,480.0
        10,885.0
        1,072,036.0
        455,380.0
        0.8
        1.0
        1.0
        0.3
        0.7
        0.7
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods20x_HG006_sup-PAY77227_0-ont-sentdont-All
        All
        Ods20x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,084,448,498.0
        96,988.0
        3,740,915.0
        1,364,795.0
        0.8
        1.0
        1.0
        0.3
        0.7
        0.7
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods20x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50
        DEL_50
        Ods20x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,088,068,722.0
        36,186.0
        181,493.0
        175,231.0
        0.6
        0.8
        1.0
        0.5
        0.5
        0.5
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods20x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50
        DEL_gt50
        Ods20x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,088,286,362.0
        37.0
        2.0
        698.0
        0.0
        0.1
        1.0
        1.0
        0.0
        0.0
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods20x_HG006_sup-PAY77227_0-ont-sentdont-INS_50
        INS_50
        Ods20x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,088,068,080.0
        40,388.0
        177,933.0
        137,494.0
        0.7
        0.8
        1.0
        0.4
        0.6
        0.6
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods20x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50
        INS_gt50
        Ods20x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,088,286,359.0
        27.0
        15.0
        2,499.0
        0.0
        0.4
        1.0
        1.0
        0.0
        0.0
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods20x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50
        Indel_50
        Ods20x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,088,252,730.0
        5,913.0
        27,758.0
        40,937.0
        0.5
        0.8
        1.0
        0.6
        0.4
        0.4
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods20x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50
        Indel_gt50
        Ods20x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,088,285,268.0
        85.0
        1,048.0
        2,513.0
        0.4
        0.9
        1.0
        0.7
        0.3
        0.3
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods20x_HG006_sup-PAY77227_0-ont-sentdont-SNPts
        SNPts
        Ods20x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,086,002,292.0
        8,994.0
        2,275,115.0
        527,357.0
        0.9
        1.0
        1.0
        0.2
        0.8
        0.8
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods20x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv
        SNPtv
        Ods20x_HG006_sup-PAY77227_0
        3,088,286,401.0
        3,087,203,492.0
        5,358.0
        1,077,551.0
        478,066.0
        0.8
        1.0
        1.0
        0.3
        0.7
        0.7
        HG006
        hg38
        -1.0
        -2.0
        ont
        sentdont
        Ods30x_HG006_sup-PAY77227_0-ont-sentdont-All
        All
        Ods30x_HG006_sup-PAY77227_0
        331,588,110.0
        331,188,998.0
        1,405.0
        397,707.0
        717.0
        1.0
        1.0
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC_x_ultima_x_clinvar
        -1.0
        -2.0
        ont
        sentdont
        Ods30x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50
        DEL_50
        Ods30x_HG006_sup-PAY77227_0
        331,588,110.0
        331,570,693.0
        446.0
        16,971.0
        145.0
        1.0
        1.0
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC_x_ultima_x_clinvar
        -1.0
        -2.0
        ont
        sentdont
        Ods30x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50
        DEL_gt50
        Ods30x_HG006_sup-PAY77227_0
        331,588,110.0
        331,588,110.0
        0.0
        0.0
        0.0
        1.0
        HG006
        giabHC_x_ultima_x_clinvar
        -1.0
        -2.0
        ont
        sentdont
        Ods30x_HG006_sup-PAY77227_0-ont-sentdont-INS_50
        INS_50
        Ods30x_HG006_sup-PAY77227_0
        331,588,110.0
        331,571,741.0
        432.0
        15,937.0
        93.0
        1.0
        1.0
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC_x_ultima_x_clinvar
        -1.0
        -2.0
        ont
        sentdont
        Ods30x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50
        INS_gt50
        Ods30x_HG006_sup-PAY77227_0
        331,588,110.0
        331,588,109.0
        0.0
        1.0
        0.0
        1.0
        1.0
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC_x_ultima_x_clinvar
        -1.0
        -2.0
        ont
        sentdont
        Ods30x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50
        Indel_50
        Ods30x_HG006_sup-PAY77227_0
        331,588,110.0
        331,586,680.0
        40.0
        1,390.0
        30.0
        1.0
        1.0
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC_x_ultima_x_clinvar
        -1.0
        -2.0
        ont
        sentdont
        Ods30x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50
        Indel_gt50
        Ods30x_HG006_sup-PAY77227_0
        331,588,110.0
        331,588,087.0
        1.0
        22.0
        0.0
        1.0
        1.0
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC_x_ultima_x_clinvar
        -1.0
        -2.0
        ont
        sentdont
        Ods30x_HG006_sup-PAY77227_0-ont-sentdont-SNPts
        SNPts
        Ods30x_HG006_sup-PAY77227_0
        331,588,110.0
        331,336,502.0
        324.0
        251,284.0
        290.0
        1.0
        1.0
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC_x_ultima_x_clinvar
        -1.0
        -2.0
        ont
        sentdont
        Ods30x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv
        SNPtv
        Ods30x_HG006_sup-PAY77227_0
        331,588,110.0
        331,475,846.0
        162.0
        112,102.0
        159.0
        1.0
        1.0
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC_x_ultima_x_clinvar
        -1.0
        -2.0
        ont
        sentdont

        Rules Benchmark Data2

        Showing 0/25 rows and 23/23 columns.
        combined_rulesamplerulesh:m:smax_rssmax_vmsmax_ussmax_pssio_inio_outmean_loadcpu_timehostnameipnproccpu_efficiencyinstance_typeregion_azspot_costsnakemake_threadstask_costrule_prefixrule_suffix
        alignstats_smmary_compile-all.
        all.
        alignstats_smmary_compile
        0.7
        0:00:00
        13.9
        30.5
        6.9
        7.4
        3.7
        0.0
        0.0
        0.0
        ip-10-0-0-216
        52.11.194.193
        8.0
        0.0
        r7i.2xlarge
        us-west-2d
        0.2
        2.0
        0.0
        alignstats_smmary_compile
        NA
        alignstats_summary-all.
        all.
        alignstats_summary
        0.3
        0:00:00
        15.3
        38.6
        6.3
        7.0
        0.0
        0.0
        0.0
        0.0
        ip-10-0-0-216
        52.11.194.193
        8.0
        0.0
        r7i.2xlarge
        us-west-2d
        0.2
        1.0
        0.0
        alignstats_summary
        NA
        final_multiqc2-DAY_all.
        DAY_all.
        final_multiqc2
        11.0
        0:00:10
        138.1
        2,698.1
        132.8
        134.5
        1,973.6
        12.9
        59.2
        6.7
        ip-10-0-0-216
        52.11.194.193
        8.0
        0.6
        r7i.2xlarge
        us-west-2d
        0.2
        4.0
        0.0
        final_multiqc2
        NA
        ont.alignstats-Ods20x_HG006_sup-PAY77227_0.
        Ods20x_HG006_sup-PAY77227_0.
        ont.alignstats
        286.7
        0:04:46
        9,325.7
        11,434.2
        9,063.0
        9,063.6
        627.0
        0.0
        271.9
        780.5
        i192-dy-all-1
        10.0.1.128
        192.0
        2.7
        c7i.48xlarge
        us-west-2d
        3.0
        32.0
        0.0
        ont
        alignstats
        ont.alignstats-Ods30x_HG006_sup-PAY77227_0.
        Ods30x_HG006_sup-PAY77227_0.
        ont.alignstats
        390.6
        0:06:30
        10,455.6
        12,499.2
        10,475.5
        10,476.2
        1,362.1
        0.0
        297.0
        1,161.3
        i192-dy-all-1
        10.0.1.128
        192.0
        3.0
        c7i.48xlarge
        us-west-2d
        3.0
        32.0
        0.1
        ont
        alignstats
        ont.sentdont.1-24-Ods5x_HG006_sup-PAY77227_0.
        Ods5x_HG006_sup-PAY77227_0.
        ont.sentdont.1-24
        3,990.5
        1:06:30
        38,996.0
        50,226.1
        38,969.0
        38,972.8
        19,382.1
        13,408.2
        18,343.8
        672,821.9
        i192-dy-all-3
        10.0.1.102
        192.0
        168.6
        c7i.48xlarge
        us-west-2d
        3.0
        192.0
        3.3
        ont
        sentdont.1-24
        ont.sentdont.1-24-Ods10x_HG006_sup-PAY77227_0.
        Ods10x_HG006_sup-PAY77227_0.
        ont.sentdont.1-24
        2,391.1
        0:39:51
        39,000.3
        50,223.1
        39,087.4
        39,092.8
        26,761.6
        7,476.2
        17,611.7
        364,350.0
        i192-dy-all-1
        10.0.1.76
        192.0
        152.4
        c7i.48xlarge
        us-west-2d
        3.0
        192.0
        2.0
        ont
        sentdont.1-24
        ont.sentdont.1-24-Ods15x_HG006_sup-PAY77227_0.
        Ods15x_HG006_sup-PAY77227_0.
        ont.sentdont.1-24
        1,710.6
        0:28:30
        38,990.1
        50,223.1
        38,997.2
        39,002.4
        32,709.4
        4,349.7
        16,070.1
        230,807.8
        i192-dy-all-4
        10.0.1.145
        192.0
        134.9
        c7i.48xlarge
        us-west-2d
        3.0
        192.0
        1.4
        ont
        sentdont.1-24
        ont.sentdont.1-24-Ods20x_HG006_sup-PAY77227_0.
        Ods20x_HG006_sup-PAY77227_0.
        ont.sentdont.1-24
        1,643.3
        0:27:23
        38,994.6
        50,223.1
        38,983.9
        38,989.2
        40,861.8
        4,730.7
        13,830.0
        192,781.2
        i192-dy-all-14
        10.0.1.33
        192.0
        117.3
        m7i.metal-48xl
        us-west-2d
        3.0
        192.0
        1.4
        ont
        sentdont.1-24
        ont.sentdont.1-24-Ods30x_HG006_sup-PAY77227_0.
        Ods30x_HG006_sup-PAY77227_0.
        ont.sentdont.1-24
        1,528.2
        0:25:28
        39,002.4
        50,220.6
        39,072.5
        39,077.8
        54,878.9
        5,040.3
        14,220.3
        183,947.4
        i192-dy-all-3
        10.0.1.51
        192.0
        120.4
        c7i.metal-48xl
        us-west-2d
        2.6
        192.0
        1.1
        ont
        sentdont.1-24
        ont.sentdont.concat.fofn-Ods5x_HG006_sup-PAY77227_0.
        Ods5x_HG006_sup-PAY77227_0.
        ont.sentdont.concat.fofn
        0.4
        0:00:00
        3.2
        7.7
        0.1
        0.3
        0.0
        0.0
        0.0
        0.0
        ip-10-0-0-216
        52.11.194.193
        8.0
        0.0
        r7i.2xlarge
        us-west-2d
        0.2
        1.0
        0.0
        ont
        sentdont.concat.fofn
        ont.sentdont.concat.fofn-Ods10x_HG006_sup-PAY77227_0.
        Ods10x_HG006_sup-PAY77227_0.
        ont.sentdont.concat.fofn
        0.4
        0:00:00
        15.3
        38.7
        6.4
        6.8
        0.0
        0.0
        0.0
        0.0
        ip-10-0-0-216
        52.11.194.193
        8.0
        0.0
        r7i.2xlarge
        us-west-2d
        0.2
        1.0
        0.0
        ont
        sentdont.concat.fofn
        ont.sentdont.concat.fofn-Ods15x_HG006_sup-PAY77227_0.
        Ods15x_HG006_sup-PAY77227_0.
        ont.sentdont.concat.fofn
        0.4
        0:00:00
        3.2
        7.7
        0.1
        0.3
        0.0
        0.0
        0.0
        0.0
        ip-10-0-0-216
        52.11.194.193
        8.0
        0.0
        r7i.2xlarge
        us-west-2d
        0.2
        1.0
        0.0
        ont
        sentdont.concat.fofn
        ont.sentdont.concat.fofn-Ods20x_HG006_sup-PAY77227_0.
        Ods20x_HG006_sup-PAY77227_0.
        ont.sentdont.concat.fofn
        21.0
        0:00:21
        7.0
        23.1
        1.0
        1.4
        1.8
        0.0
        0.0
        0.0
        ip-10-0-0-216
        52.11.194.193
        8.0
        0.0
        r7i.2xlarge
        us-west-2d
        0.2
        1.0
        0.0
        ont
        sentdont.concat.fofn
        ont.sentdont.concat.fofn-Ods30x_HG006_sup-PAY77227_0.
        Ods30x_HG006_sup-PAY77227_0.
        ont.sentdont.concat.fofn
        12.4
        0:00:12
        8.9
        26.5
        2.2
        2.7
        2.6
        0.0
        0.1
        0.0
        ip-10-0-0-216
        52.11.194.193
        8.0
        0.0
        r7i.2xlarge
        us-west-2d
        0.2
        1.0
        0.0
        ont
        sentdont.concat.fofn
        ont.sentdont.concordance-Ods5x_HG006_sup-PAY77227_0.
        Ods5x_HG006_sup-PAY77227_0.
        ont.sentdont.concordance
        2,729.4
        0:45:29
        60,118.7
        364,649.9
        60,156.0
        60,157.3
        1,360.3
        12,594.3
        116.7
        567.7
        i192-dy-all-1
        10.0.1.73
        192.0
        0.2
        c7i.metal-48xl
        us-west-2d
        2.6
        96.0
        1.0
        ont
        sentdont.concordance
        ont.sentdont.concordance-Ods10x_HG006_sup-PAY77227_0.
        Ods10x_HG006_sup-PAY77227_0.
        ont.sentdont.concordance
        2,698.8
        0:44:58
        90,369.3
        359,201.0
        90,422.0
        90,423.1
        3,226.6
        11,518.6
        128.6
        549.0
        i192-dy-all-4
        10.0.1.145
        192.0
        0.2
        c7i.48xlarge
        us-west-2d
        3.0
        96.0
        1.1
        ont
        sentdont.concordance
        ont.sentdont.concordance-Ods15x_HG006_sup-PAY77227_0.
        Ods15x_HG006_sup-PAY77227_0.
        ont.sentdont.concordance
        2,512.4
        0:41:52
        102,426.2
        359,201.0
        102,467.8
        102,468.9
        3,079.7
        10,998.7
        126.7
        616.7
        i192-dy-all-4
        10.0.1.145
        192.0
        0.2
        c7i.48xlarge
        us-west-2d
        3.0
        96.0
        1.0
        ont
        sentdont.concordance
        ont.sentdont.concordance-Ods20x_HG006_sup-PAY77227_0.
        Ods20x_HG006_sup-PAY77227_0.
        ont.sentdont.concordance
        2,411.3
        0:40:11
        85,783.4
        364,649.9
        85,842.6
        85,843.8
        4,522.1
        10,932.3
        80.2
        447.8
        i192-dy-all-4
        10.0.1.66
        192.0
        0.2
        c7i.metal-48xl
        us-west-2d
        2.6
        96.0
        0.9
        ont
        sentdont.concordance
        ont.sentdont.concordance-Ods30x_HG006_sup-PAY77227_0.
        Ods30x_HG006_sup-PAY77227_0.
        ont.sentdont.concordance
        2,696.6
        0:44:56
        97,772.5
        719,838.3
        97,788.1
        97,789.2
        5,792.8
        11,074.8
        94.3
        6.7
        i192-dy-all-5
        10.0.1.193
        192.0
        0.0
        m7i.metal-48xl
        us-west-2d
        3.0
        96.0
        1.1
        ont
        sentdont.concordance
        ont.sentdont.merge-Ods5x_HG006_sup-PAY77227_0.
        Ods5x_HG006_sup-PAY77227_0.
        ont.sentdont.merge
        67.1
        0:01:07
        79.1
        13,418.8
        82.4
        82.8
        0.0
        494.7
        142.8
        103.2
        i192-dy-all-1
        10.0.1.73
        192.0
        1.5
        c7i.metal-48xl
        us-west-2d
        2.6
        64.0
        0.0
        ont
        sentdont.merge
        ont.sentdont.merge-Ods10x_HG006_sup-PAY77227_0.
        Ods10x_HG006_sup-PAY77227_0.
        ont.sentdont.merge
        41.9
        0:00:41
        78.9
        12,139.0
        82.2
        82.7
        6.0
        201.5
        84.5
        39.3
        i192-dy-all-9
        10.0.1.108
        192.0
        0.9
        c7i.metal-48xl
        us-west-2d
        2.6
        64.0
        0.0
        ont
        sentdont.merge
        ont.sentdont.merge-Ods15x_HG006_sup-PAY77227_0.
        Ods15x_HG006_sup-PAY77227_0.
        ont.sentdont.merge
        30.7
        0:00:30
        78.8
        12,523.0
        83.2
        83.4
        6.0
        238.4
        144.6
        46.2
        i192-dy-all-4
        10.0.1.145
        192.0
        1.5
        c7i.48xlarge
        us-west-2d
        3.0
        64.0
        0.0
        ont
        sentdont.merge
        ont.sentdont.merge-Ods20x_HG006_sup-PAY77227_0.
        Ods20x_HG006_sup-PAY77227_0.
        ont.sentdont.merge
        290.6
        0:04:50
        91.2
        13,438.7
        108.9
        109.2
        477.9
        727.3
        21.5
        0.0
        i192-dy-all-8
        10.0.1.137
        192.0
        0.0
        m7i.metal-48xl
        us-west-2d
        3.0
        64.0
        0.1
        ont
        sentdont.merge
        ont.sentdont.merge-Ods30x_HG006_sup-PAY77227_0.
        Ods30x_HG006_sup-PAY77227_0.
        ont.sentdont.merge
        81.7
        0:01:21
        88.1
        13,501.9
        110.0
        110.5
        107.7
        724.5
        49.4
        7.4
        i192-dy-all-3
        10.0.1.51
        192.0
        0.1
        c7i.metal-48xl
        us-west-2d
        2.6
        64.0
        0.0
        ont
        sentdont.merge

        Alignstats Data

        Alignstats Data.

        Showing 0/2 rows and 166/166 columns.
        samplealignerAlignedBasesAlignedBasesPctAlignedReadLengthMeanAlignedReadLengthMedianAlignedReadLengthModeAlignedReadLengthStandardDeviationChimericReadPairPctDeletedBasesDeletedBasesPctDuplicateBasesDuplicateBasesPctDuplicateReadsDuplicateReadsPctFilteredRecordsFilteredRecordsPctInputFileNameInputFileSizeInsertSizeMeanInsertSizeMedianInsertSizeModeInsertSizeStandardDeviationInsertedBasesInsertedBasesPctMappedBasesMappedBasesPctMappedReadsMappedReadsPctMatchedBasesMatchedBasesPctMismatchedBasesMismatchedBasesPctPerfectBasesPerfectBasesPctPerfectReadsPerfectReadsPctQ20BasesQ20BasesPctR1AlignedBasesR1AlignedBasesPctR1AlignedReadLengthMeanR1AlignedReadLengthMedianR1AlignedReadLengthModeR1AlignedReadLengthStandardDeviationR1DeletedBasesR1DeletedBasesPctR1InsertedBasesR1InsertedBasesPctR1MappedBasesR1MappedBasesPctR1MappedReadsR1MappedReadsPctR1MatchedBasesR1MatchedBasesPctR1MismatchedBasesR1MismatchedBasesPctR1PerfectBasesR1PerfectBasesPctR1PerfectReadsR1PerfectReadsPctR1Q20BasesR1Q20BasesPctR1SoftClippedBasesR1SoftClippedBasesPctR1SoftClippedReadsR1SoftClippedReadsPctR1UnmappedBasesR1UnmappedBasesPctR1UnmappedReadsR1UnmappedReadsPctR1UnpairedReadsR1UnpairedReadsPctR1YieldBasesR1YieldReadsR2AlignedBasesR2AlignedBasesPctR2AlignedReadLengthMeanR2AlignedReadLengthMedianR2AlignedReadLengthModeR2AlignedReadLengthStandardDeviationR2DeletedBasesR2DeletedBasesPctR2InsertedBasesR2InsertedBasesPctR2MappedBasesR2MappedBasesPctR2MappedReadsR2MappedReadsPctR2MatchedBasesR2MatchedBasesPctR2MismatchedBasesR2MismatchedBasesPctR2PerfectBasesR2PerfectBasesPctR2PerfectReadsR2PerfectReadsPctR2Q20BasesR2Q20BasesPctR2SoftClippedBasesR2SoftClippedBasesPctR2SoftClippedReadsR2SoftClippedReadsPctR2UnmappedBasesR2UnmappedBasesPctR2UnmappedReadsR2UnmappedReadsPctR2UnpairedReadsR2UnpairedReadsPctR2YieldBasesR2YieldReadsSoftClippedBasesSoftClippedBasesPctSoftClippedReadsSoftClippedReadsPctTotalPairsTotalRecordsTotalSameChrPairsTotalSameChrPairsPctUnfilteredRecordsUnfilteredRecordsPctUnmappedBasesUnmappedBasesPctUnmappedReadsUnmappedReadsPctUnpairedReadsUnpairedReadsPctWgsAlignedReadsWgsAlignedReadsPctWgsCalculatedAlignedReadsWgsCovDuplicateReadsWgsCovDuplicateReadsPctWgsCoverageBases1WgsCoverageBases10WgsCoverageBases100WgsCoverageBases1000WgsCoverageBases1000PctWgsCoverageBases100PctWgsCoverageBases10PctWgsCoverageBases15WgsCoverageBases15PctWgsCoverageBases1PctWgsCoverageBases20WgsCoverageBases20PctWgsCoverageBases30WgsCoverageBases30PctWgsCoverageBases40WgsCoverageBases40PctWgsCoverageBases50WgsCoverageBases500WgsCoverageBases500PctWgsCoverageBases50PctWgsCoverageBases60WgsCoverageBases60PctWgsCoverageBases70WgsCoverageBases70PctWgsCoverageMeanWgsCoverageMedianWgsCoverageStandardDeviationWgsExpectedAlignedReadsWgsFilteredLowBaseQualityBasesWgsFilteredOverlapBasesWgsReadsPairedWgsReadsPairedWithMatesWgsTotalReadsYieldBasesYieldReads
        Ods20x_HG006_sup-PAY77227_0.ont
        ont
        56,333,534,274.0
        93.3
        14,315.6
        9,128.0
        200.0
        14,629.3
        100.0
        461,380,411.0
        0.8
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        results/day/hg38/Ods20x_HG006_sup-PAY77227_0/align/ont/Ods20x_HG006_sup-PAY77227_0.ont.cram
        37,646,661,855.0
        0.0
        0.0
        0.0
        0.0
        346,426,198.0
        0.6
        60,127,700,443.0
        99.6
        3,935,121.0
        88.0
        55,296,113,691.0
        98.2
        690,994,385.0
        1.2
        62,427,396.0
        0.1
        110,533.0
        2.8
        53,051,691,683.0
        94.2
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        3,794,166,169.0
        6.3
        3,365,019.0
        85.5
        0.0
        4,472,406.0
        0.0
        0.0
        4,472,406.0
        100.0
        240,525,735.0
        0.4
        537,285.0
        12.0
        0.0
        0.0
        3,935,121.0
        88.0
        3,935,121.0
        0.0
        0.0
        2,924,129,614.0
        2,760,215,499.0
        3,256,294.0
        333,825.0
        0.0
        0.1
        89.0
        2,279,999,466.0
        73.6
        94.3
        1,259,543,880.0
        40.6
        86,928,105.0
        2.8
        15,850,998.0
        0.5
        10,168,382.0
        629,134.0
        0.0
        0.3
        7,325,922.0
        0.2
        5,635,512.0
        0.2
        18.1
        18.0
        31.4
        3,935,121.0
        0.0
        0.0
        0.0
        0.0
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